NDA-Upload-Preparation.md

@@ -12,10 +12,10 @@ At this point, we are ready to export clinical/behavioral instruments as CSV fil
 For neuroimaging data, Dataorc can generate image03 CSV files for DICOM and NIfTI formats. In both cases, we require data to be processed through the QuNex `import_dicom` step, after which we have sorted DICOM files, NIfTI files, NIfTI JSON sidecar files, and bvec and bval files for diffusion data. For NIfTI uploads, because certain DICOM fields are not included in the JSON file by dcm2niix, we have to export them separately from XNAT API. 
 
 Config files you need to prepare for a new study:
-1. workspace config: `redcap` and `nda_upload` sections in the [workspace config file](docs/dataorc-workspace/workspace-config.md)
-1. [transformation rules](docs/redcap-and-nda-prep/02_transformation_rules.md)
-1. [SQL queries](docs/redcap-and-nda-prep/03_database_and_custom_queries.md)
-1. [export config for each NDA instrument](docs/redcap-and-nda-prep/04_export-config.md)
+1. workspace config: `redcap` and `nda_upload` sections in the [workspace config file](NDA-Prep/workspace-config.md)
+1. [transformation rules](NDA-Prep/02_transformation_rules.md)
+1. [SQL queries](NDA-Prep/03_database_and_custom_queries.md)
+1. [export config for each NDA instrument](NDA-Prep/04_export-config.md)
 1. qunex mapping with nda sequence type
 
 Once you have a study setup with the appropriate configurations for the data that you need to upload, re-running the workflow is